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dotplot comparisons  (DNASTAR)


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    DNASTAR dotplot comparisons
    SMA20/PMIS2 is unique to Eutheria. Shown are <t>dotplot</t> comparisons constructed with a concatemeric assembly of armadillo reverse-complemented Atp4a , Pmis2 , and Haus5 coding sequences (cds) as the vertical dimension for interrogation of armadillo and opossum genomic loci, and a comparable assembly with reverse-complemented Atp4a , Pmis2 , and reverse-complemented Etv2 cds for interrogation of platypus genomic loci.
    Dotplot Comparisons, supplied by DNASTAR, used in various techniques. Bioz Stars score: 99/100, based on 10381 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/dotplot comparisons/product/DNASTAR
    Average 99 stars, based on 10381 article reviews
    dotplot comparisons - by Bioz Stars, 2026-06
    99/100 stars

    Images

    1) Product Images from "SMA20/PMIS2 Is a Rapidly Evolving Sperm Membrane Alloantigen with Possible Species-Divergent Function in Fertilization"

    Article Title: SMA20/PMIS2 Is a Rapidly Evolving Sperm Membrane Alloantigen with Possible Species-Divergent Function in Fertilization

    Journal: International Journal of Molecular Sciences

    doi: 10.3390/ijms25073652

    SMA20/PMIS2 is unique to Eutheria. Shown are dotplot comparisons constructed with a concatemeric assembly of armadillo reverse-complemented Atp4a , Pmis2 , and Haus5 coding sequences (cds) as the vertical dimension for interrogation of armadillo and opossum genomic loci, and a comparable assembly with reverse-complemented Atp4a , Pmis2 , and reverse-complemented Etv2 cds for interrogation of platypus genomic loci.
    Figure Legend Snippet: SMA20/PMIS2 is unique to Eutheria. Shown are dotplot comparisons constructed with a concatemeric assembly of armadillo reverse-complemented Atp4a , Pmis2 , and Haus5 coding sequences (cds) as the vertical dimension for interrogation of armadillo and opossum genomic loci, and a comparable assembly with reverse-complemented Atp4a , Pmis2 , and reverse-complemented Etv2 cds for interrogation of platypus genomic loci.

    Techniques Used: Construct



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    SMA20/PMIS2 is unique to Eutheria. Shown are <t>dotplot</t> comparisons constructed with a concatemeric assembly of armadillo reverse-complemented Atp4a , Pmis2 , and Haus5 coding sequences (cds) as the vertical dimension for interrogation of armadillo and opossum genomic loci, and a comparable assembly with reverse-complemented Atp4a , Pmis2 , and reverse-complemented Etv2 cds for interrogation of platypus genomic loci.
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    A) <t>Dotplot</t> comparison of pairwise alignments between whole-genome sequences from representatives of various Francisella subspecies is shown. The o-methyltransferase ortholog is highlighted on the Francisella tularensis subsp. holarctica strain 257 in orange (Y-axis) and on the Francisella tularensis subsp tularensis SchuS4 strain (X-axis, reference genome) in red. Blocks of synteny between each of the Francisella genomes compared to the Francisella tularensis subsp tularensis SchuS4 strain are plotted and rearrangements are indicated by breaks in the linearity of the lines and perpendicular orientations.
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    A) <t>Dotplot</t> comparison of pairwise alignments between whole-genome sequences from representatives of various Francisella subspecies is shown. The o-methyltransferase ortholog is highlighted on the Francisella tularensis subsp. holarctica strain 257 in orange (Y-axis) and on the Francisella tularensis subsp tularensis SchuS4 strain (X-axis, reference genome) in red. Blocks of synteny between each of the Francisella genomes compared to the Francisella tularensis subsp tularensis SchuS4 strain are plotted and rearrangements are indicated by breaks in the linearity of the lines and perpendicular orientations.
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    Image Search Results


    SMA20/PMIS2 is unique to Eutheria. Shown are dotplot comparisons constructed with a concatemeric assembly of armadillo reverse-complemented Atp4a , Pmis2 , and Haus5 coding sequences (cds) as the vertical dimension for interrogation of armadillo and opossum genomic loci, and a comparable assembly with reverse-complemented Atp4a , Pmis2 , and reverse-complemented Etv2 cds for interrogation of platypus genomic loci.

    Journal: International Journal of Molecular Sciences

    Article Title: SMA20/PMIS2 Is a Rapidly Evolving Sperm Membrane Alloantigen with Possible Species-Divergent Function in Fertilization

    doi: 10.3390/ijms25073652

    Figure Lengend Snippet: SMA20/PMIS2 is unique to Eutheria. Shown are dotplot comparisons constructed with a concatemeric assembly of armadillo reverse-complemented Atp4a , Pmis2 , and Haus5 coding sequences (cds) as the vertical dimension for interrogation of armadillo and opossum genomic loci, and a comparable assembly with reverse-complemented Atp4a , Pmis2 , and reverse-complemented Etv2 cds for interrogation of platypus genomic loci.

    Article Snippet: We also queried the NCBI Gene database (10 November 2024) to retrieve the pig and other species’ syntenic regions spanning Atp4a – Haus5 and conducted pairwise dotplot comparisons (MegAlign program of the Lasergene 15 software suite; DNAStar, Madison, WI, USA) to identify SMA20/PMIS2 loci and to align deduced amino acid sequences of predicted ORFs.

    Techniques: Construct

    A) Dotplot comparison of pairwise alignments between whole-genome sequences from representatives of various Francisella subspecies is shown. The o-methyltransferase ortholog is highlighted on the Francisella tularensis subsp. holarctica strain 257 in orange (Y-axis) and on the Francisella tularensis subsp tularensis SchuS4 strain (X-axis, reference genome) in red. Blocks of synteny between each of the Francisella genomes compared to the Francisella tularensis subsp tularensis SchuS4 strain are plotted and rearrangements are indicated by breaks in the linearity of the lines and perpendicular orientations.

    Journal: PLoS ONE

    Article Title: Host-Pathogen O-Methyltransferase Similarity and Its Specific Presence in Highly Virulent Strains of Francisella tularensis Suggests Molecular Mimicry

    doi: 10.1371/journal.pone.0020295

    Figure Lengend Snippet: A) Dotplot comparison of pairwise alignments between whole-genome sequences from representatives of various Francisella subspecies is shown. The o-methyltransferase ortholog is highlighted on the Francisella tularensis subsp. holarctica strain 257 in orange (Y-axis) and on the Francisella tularensis subsp tularensis SchuS4 strain (X-axis, reference genome) in red. Blocks of synteny between each of the Francisella genomes compared to the Francisella tularensis subsp tularensis SchuS4 strain are plotted and rearrangements are indicated by breaks in the linearity of the lines and perpendicular orientations.

    Article Snippet: Whole genome alignments and dotplot comparisons are provided by the Broad Institute and the methodology for the Francisella comparative genome project is published .

    Techniques: Comparison